Friday, September 24, 2010

Biophysics

This is another word I would like to add to English, if it is not there already in existence, this time in Scientific World.


We had an Engineering Exhibition in the University, I do not know what was being exhibited there but what my gut feeling says is that they are all big events for public consumption and certainly not miniature exhibits of biological nature.

I am pretty sure they did not talk about biophysics and nano-technology.

I have been against the Coal Power Project form its inception.
I have many reasons including Acid Rain and I have stated that Coal Marketing Board will be as bad as the Paddy Marketing Board of yesteryear and its corruption scale will have to be estimated in time to come.


Suffice is to say that most of the Coal would wind up in undesirable places and the scale of corruption will be covered by black soot.

How black soot will effect our children's chest physiology and sporting outcomes are a different kettle of fish.

I have voiced these concerns with scientific data but they are under the carpet of power politics now.


One pertinent question our energy planners not addressed is that these coal power plants are operational 24 hours a day and the interruption of nocturnal terrestrial cooling effect that is necessary for air circulation and water condensation and the night rain pattern that we used enjoy that invariably purified the air of soot, dirt and chemicals is going to be disturbed due to constantly warm air that is not circulating.

The effect of this is going to be phenomenal.


As long as the rain is there even infrequently and with disturbed patterns then there is some reclamation.

But think of the scenario for some reason or the other if the rain fails for a period of two years with drought.

Then we have to be using more and more coal power to generate power, the conditions are conducive for catastrophic events.


The nocturnal cooling effect is negated for a prolonged period of time and the pollution it created is of clinical scale.

We see this pattern in Kandy even without the warming effect discussed above and that is why Kandy is the most polluted city of the country when rain fails the nocturnal cooling draft fails and the pollutants remain for considerable length of time in the lower atmosphere.

We have now cleared our rain forest to less (33% is the critical value) than the sustainable level for natural rain and ecological balance.

We can see the effect of acid rain in less than 5 years after a period of prolonged drought.


I will talk a little about the miniature life of biological nature that can mop up some of the CO2 created by the mega projects like Coal Power Plants.

But more than thousands of other chemicals that are emitted which cannot be made safe and some of them causing cancer (are the projects for future studies) in the air not diluted due to stagnation and failing air circulation.

These are mega events and banning cigarettes has no ameliorating effects once these chemicals are in air and in circulation and when we have to breath them 24 hours a day.


The algae I had been interested in are tiny but common in nature and their contribution can be very significant if properly harnessed but the experiments done on them are very few an far between.

I gather in Germany they are working on them to mop up CO2 emitted by coal power units.


What ever big or small engineering feats it may be whether it is motor car or a rocket no engineering feat can bring about more than 33% efficiency or throughput.


In biological system this is scaled down to less than 3 to 4% and even though the process is very slow by the shear numbers of biological beings and the multiplying cells the process of conversion is made good with eventually.


Problem with engineering feats is that they are not cost effective or efficient.

The rate of conversion is fast and the rate of production of pollutants and poisons are also fast.


This is what I used to argue with my fellow engineering students at the campus many moons ago and also asked why they used heavy metal to built cars (that also not stainless steel) that is subjected to resistance or impedance or inertia of motion and why not aluminum like in aircrafts.


They will give some answers and I will give counter arguments while playing bridge (which I learnt from them) and this goes on with new themes added.

Years went by we parted and departed from ivory towers we built and went into real world and domestics. It is sad now I cannot find somebody to talk ten words in analytical English on a scientific topic or discussion.


Even, people like Prof. Carlo Fonseka talking and taking partisan in bizarre politics in their twilight years sadden me most.

I am not saying that he not entitled to it. With his reputation if he makes a mistake his ardent followers are left astray.


What has happened to their scientific inquiry and what has happened to their inbuilt instincts.


We were fed a good and healthy dose of inquiry and free discussion then and now there is paucity of inquiry and query, question or rationalistic views about world around us living and inanimate (Physics).

I dearly remember Prof. Osmond Jayaratne and his investigation into lightening.

There was Prof. Rnjith Ruberu with beautiful exposition of Botany and Biology.

I am not talking about Chintanaya Professors with mathematical talents.


I never talked about biophysics then since all medical stuff including biochemistry was boring for me.


Now that I am somewhat of an independent thinker my argument of biophysics start with a simple relationship (not Newton's equal and opposite reaction).

This is where I have element of disagreement with Buddhist practices, too.

Why only animals are sacred?


Why not other living things, the plants that all animals depend directly and indirectly?

To me plants are sacred too.

Without plant life the world cannot exist.

This is where my thinking is at variance with even Buddhist tenets.

Why there is only a law for animals?

Is it only animals with brains or nervous system that is important to Buddhists?

I have not found a answer for this in Buddhist scriptures.

So I am entitled to my own analysis in a biological sense.



So my simple theoretical aspect of biological relationships especially the biophysics is that there is infinite relationship one to one and one to many in every biological cell or biological system.

There is no distinction of pant life and animal life whatever the form it may be.

They are all life forms in a constant web of actions and reactions.

As far as we know they can be seen with definite evidence only on this planet.


This planet is the only planet we know of and I am not extrapolating to any other heavenly objects with life or without life in this universe.


Ever since the life began in this planet this biological or biophysical relationship continuously existed without a break.


There is either positive or negative relationship but this relationship is such that it was never to destroy or eliminate one or the other.


Continuity of life existed uninterrupted in spite of major physical catastrophes.


If this would not have being the case various new forms of life would not have emerged in evolution.

There was competition but never extermination by living thing by living things.


That is my bona fide or the compelling argument.


All life forms are important including mosquitoes whether they carry infectious agents or not.

We cannot argue that world should be without insects including mosquitoes.

There my argument and tent converge with Buddhism.

All life forms be happy!

It is the physical catastrophes that eliminated species lock stock and barrel but never simple biological competition.


This theoretical aspect had very interesting convergence when I saw my fish dieing in the open including the Guppies.

First I thought it was the algal bloom and the lack of oxygen.

It is the very simple and straight forward plausible explanation I can give.


But when this happened again and when I checked with the internal digital temperature it was not strange coincidence that the temperature was above 95 degrees Fahrenheit.


It was the global warming (atmospheric temperature) that killed the fishes, other factors were contributory.


Interestingly high atmospheric temperature encourages mosquito breeding.


Every ton of coal (when it is burnt 24 hours a day) we burn will increase the number of mosquitoes by billions!

Single physical change, the temperature alone can kill animals.

Humans can die of heat stroke and why not fish.


There is a protein called heat shock protein even in bacteria and our cells also have it in a different form and all animals too have this protein to overcome stress.

Heat is a stress.

That system can easily be damaged.


Yes most of the fish who are kept indoors especially the mollies cannot live above 86 degrees.


It was only algal bloom and lack oxygen alone the some fish could come up and breath at the surface or produce young ones before dieing but this did not happen.


The biological relationships I propose in theory could not keep pace with the adverse temperature which is partly man made.

There was no time for evolutionary adaptation.

The other relationship is human population expansion.

I believe we have come to the optimum population of 6 billions.

The earth cannot sustain 9 billions.


This extra 3 billion will upset the balance of biophysical relationship that come into equilibrium in the microscopic levels.

The mega level is man and his megalomaniac beahviour.


Earth cannot sustain its biophysical relationships with the rate at human population is expanding and consuming all the limited resources.

Biophysical barrier will break down soon.

Then calamities after calamities would occur.

Gloom, bloom and doom unless we arrest the population expansion and the rate of use of easily available energy resources.

First we have to arrest the population growth.

Second we have to have a food security.

Third we have to prevent the made made causes of global warming.

Even in this country the priority is on energy and its use and its expansion and not conservation.

We got our priorities wrong.

We will loose all the biodiversity and elephants in no time.

We do not have neither the master plan nor the vision.

We do not have philosophers.

We do not have scientist of international caliber.

We only have politicians of various shades and colours but without a distinction.

23rd September (Poya)

ElplcX-2.0-102

Electronic Linux Professional Licentiate in Linux (Elplx-2.0) is a very good distribution sitting in the archives and gathering dust in the shelves like books written in English in our universities (nobody to read them).

I was extremely disappointed that it is relegated to archives.

I downloaded it from Distromania archives.

It is a very good distribution not one actually two in one CD.

It has Ubuntu 8.04 LTS (long term support) as default Live as well as install.

It also has Fedora 9 KDE (I gave it up at core 3) Live and Install which is pretty good.

Both connects readily to the internet and elplcs (German and English).

Its lessons are pretty good for a newbie.
This distribution should wipe its dust and come out of the shelf sooner than late.


I was hesitant to download the 1.4 GB thinking that I will get an old (not live) installable CD and my decision to have a go after 100 was a gutsy attempt (I am getting bit fed up with Linux now) and my gut feeling were culinary satisfied.

There is another worthwhile point there which I gathered, like the CD / DVD of the Linux Bible from Christopher Naegus bundling number of Live and Installable CD versions in a DVD saves lot of time for us Sri-Lankans who has to spend over 24 hours to download one DVD.

Very few will go abroad like me and download a few to bring home on a holiday abroad.

This DVD with two distributions well tested, I recommend without any hesitation and I believe it should come out of the shelf (shelf life of of Linux is changing very fast) sooner than late.